PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06889s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 119aa    MW: 14022.4 Da    PI: 10.4316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06889s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-07628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F+r  nL+ H r H
  Csa06889s010.1  6 FICEICNKGFKRDQNLQLHRRGH 28
                    89*******************88 PP

2zf-C2H212.40.0004883105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +   s+ k H + +
  Csa06889s010.1  83 WKCDKCSKKYAVMSDWKAHSKIC 105
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.57E-9528No hitNo description
Gene3DG3DSA:3.30.160.608.1E-7528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.866628IPR007087Zinc finger, C2H2
PfamPF121712.6E-6628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.011628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355974878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.57E-978103No hitNo description
SMARTSM0035520083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MATNRFICEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK DQIKKKVYIC PEKTCVHHDP  60
GRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVMSDWKA HSKICGTREY RCDCGTLFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283021e-150AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBankAJ6214931e-150AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBankAL1329531e-150AL132953.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11.
GenBankAY1439361e-150AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.
GenBankCP0026861e-150CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425953.18e-86PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_010425952.18e-86PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_010503173.19e-86PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L32e-83IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLE4MWC53e-83E4MWC5_EUTHA; mRNA, clone: RTFL01-07-P14
TrEMBLV4L1J53e-83V4L1J5_EUTSA; Uncharacterized protein
STRINGBra033840.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-73C2H2-like zinc finger protein